Search unique places to stay in San Juan Islands, WA from 100+ sites!

A cabin, a lighthouse, a glamping, your extraordinary stay awaits you

7 nights
2
1
  • airbnb
  • booking
  • vrbo
  • expedia
  • sonder
  • priceline
  • tripadvisor
  • tripcom
  • homestay
  • hotelscom
  • orbitz
  • vacasa
San Juan Islands, WA unique stays
Choose the perfect vacation accommodation
Price per night
Accommodation type
Rating

174 Unique places to stay in San Juan Islands, WA

Best family friendly San Juan Islands, WA unique stays

Among the 174 accommodations in San Juan Islands, WA, here are the 4 best family friendly unique accommodations

Water And Mountain Views In A Cozy Wooded Retreat - San Juan Islands, WA
9.9 68 reviews

Water And Mountain Views In A Cozy Wooded Retreat

cabin, Friday Harbor
This charming cabin is located on Lopez Island, just a short 12-minute drive from Lopez Village, offering beautiful views of Lopez Sound and Mt. Baker. The cabin has excellent user, location, and cleanliness ratings, ensuring a comfortable and enjoyable stay.
The cabin is comprised of two separate structures, the main house and a kitchen/bath house, connected by a short wooden walkway. The cabin sleeps up to 5 guests and is equipped with a well-stocked kitchen, a sunny deck, and a private garden, perfect for relaxing and enjoying the tranquil island surroundings.
Guemes Island Road Modern Home - San Juan Islands, WA
10 141 reviews

Guemes Island Road Modern Home

house, Anacortes
This vacation rental is situated on Guemes Island, just 5 miles from Anacortes Airport, offering a peaceful escape from the mainland while still being close to Anacortes' attractions. The property boasts excellent ratings for user experience, location, and cleanliness.
This 2-bedroom, 1-bathroom house provides 1180 square feet of living space. Enjoy amenities like a private balcony, tennis court access, a fully equipped kitchen, free parking and Wi-Fi, and a flat-screen TV.
Cabin * Hot Tub * Fire Pit * View * Getaway! - San Juan Islands, WA
9.8 26 reviews

Cabin * Hot Tub * Fire Pit * View * Getaway!

cabin, Oak Harbor
This Oak Harbor vacation home is centrally located, less than a mile from the PBY Memorial Foundation PBY-Naval Air Museum and Windjammer Park, and within two miles of Flintstone Park and the Garry Oak Gallery.
This 6,460-square-foot house boasts three bedrooms, two bathrooms, and sleeps nine, featuring a fully equipped kitchen, hot tub, fireplace, and free Wi-Fi.
Lakeside Cabin In The Trees With Views & A Hot Tub - San Juan Islands, WA
9.9 152 reviews

Lakeside Cabin In The Trees With Views & A Hot Tub

cabin, Bellingham
Heron's Nest Cabin, located on Lummi Island, offers a secluded getaway a short ferry ride (10 minutes) from Bellingham, Washington, with breathtaking views of Hale Passage and Bellingham Bay.
This two-bedroom, one-bathroom cottage sleeps four guests and features a fully equipped kitchen, a cedar hot tub, an outdoor cedar shower, a fire pit, and a unique tree root dining table; enjoy easy access to Bellingham's amenities via a quick ferry or a 20-minute drive.

Best San Juan Islands, WA unique accommodations with a garden

Sound View At Rosario Beach- Cabin 26 - San Juan Islands, WA
10 86 reviews

Sound View At Rosario Beach- Cabin 26

cabin, Anacortes
This Anacortes cabin, near Rosario Beach and Deception Pass State Park, offers stunning Puget Sound and Olympic Mountain views, and is within walking distance of the beach.
Sleeping eight, this three-bedroom, two-bathroom house boasts a full kitchen, air conditioning, a garden, parking for two vehicles, and excellent guest reviews.
Newly Listed! Cozy Historic Cottage Near Town! - San Juan Islands, WA
9.6 26 reviews

Newly Listed! Cozy Historic Cottage Near Town!

cabin, Friday Harbor
This Friday Harbor waterfront cottage is located less than a mile from the San Juan Islands Museum of Art, Lafarge Open Space, and the San Juan Historical Society Museum, and within 2 miles of the Whale Museum and PeaceHealth Peace Island Medical Center.
This two-bedroom, one-bathroom vacation rental sleeps three, offering a fully equipped kitchen, fireplace, in-unit laundry, barbecue grill, smart TV with DVD player, free WiFi, and a terrace; enjoy nearby outdoor activities and explore the San Juan Islands.
Evergreen Cabin- Serene Getaway Close To Mountain Biking, Hiking & Skiing - San Juan Islands, WA
10 7 reviews

Evergreen Cabin- Serene Getaway Close To Mountain Biking, Hiking & Skiing

cabin, Sudden Valley
This Sudden Valley cabin rental is situated 1.7 miles from Lake Whatcom and 2 miles from Sudden Valley Dog Park, offering easy access to outdoor recreation and Bellingham.
The 840-square-foot house features two bedrooms, one bathroom, sleeps six, and includes a fully equipped kitchen, in-unit laundry, and a terrace—perfect for families or groups exploring Whatcom Falls Park and Bloedel Donovan Park.
Cozy Waterfront Cabin On A Point - Mt Baker View - San Juan Islands, WA
10 196 reviews

Cozy Waterfront Cabin On A Point - Mt Baker View

bungalow, Friday Harbor
This one-bedroom cabin is located on a 3.5-acre waterfront property just outside Friday Harbor, a 5-minute drive from American Camp and a 10-minute drive from the town center.
The bungalow features a spacious open main room with large windows maximizing the views, a private gravel beach, tide pools, two fire pits, BBQs, and a mooring buoy for boat owners.

Frequently Asked Questions about unique stays in San Juan Islands, WA

  • What are some hidden gems to explore in the San Juan Islands, WA?

    Lime Kiln Point State Park on San Juan Island is a fantastic spot for whale watching, but exploring the less-visited trails offers stunning views. For a quieter beach experience, head to South Beach on Lopez Island. Also, the Roche Harbor Resort on San Juan Island has a rich history and beautiful architecture, but venturing beyond the main area reveals charming hidden corners and stunning waterfront views. Exploring the backroads of Orcas Island by car or bike can lead to unexpected discoveries, such as secluded coves and breathtaking vistas.
  • Are there any notable festivals that take place in the San Juan Islands, WA?

    The Friday Harbor Whale Museum often hosts events related to whale research and conservation. The San Juan County Fair is a long-standing community event with agricultural competitions and entertainment. Many smaller, community-based festivals happen throughout the year, often celebrating local art, music, and food, so checking local event listings closer to your travel dates is recommended.
  • What types of natural environments are typical in the San Juan Islands, WA?

    The San Juan Islands boast diverse natural environments. Expect lush forests of Douglas fir and western hemlock, rocky shorelines teeming with marine life, and beautiful sandy beaches. You'll also find diverse wildlife, including orcas, harbor seals, bald eagles, and various bird species. The islands also feature dramatic cliffs and meadows with wildflowers in season.
  • Are there popular sporting events or activities in the San Juan Islands, WA?

    Kayaking and paddleboarding are extremely popular, offering access to the islands' stunning coastline and wildlife. Whale watching tours are a major draw, with opportunities to see orcas and other marine mammals. Hiking trails throughout the islands cater to various skill levels, from gentle strolls to more challenging climbs. Fishing charters are also available, offering opportunities for salmon and other species.
  • What special gear or clothing is recommended for the climate in the San Juan Islands, WA?

    Pack layers! The weather in the San Juan Islands can be unpredictable, with cool temperatures even in summer. Bring rain gear, including a waterproof jacket and pants, as showers are common. Sturdy walking shoes are essential for exploring the islands' trails. A fleece jacket or sweater will provide warmth on cooler days. Don't forget sunscreen and a hat, even on cloudy days.
  • What activities allow you to experience local traditions and interact with residents in the San Juan Islands, WA?

    Visiting local farmers markets offers a chance to sample regional produce and interact with farmers. Exploring the many art galleries and studios throughout the islands allows you to engage with local artists and their work. Participating in a whale watching tour with a local operator provides opportunities to learn about the islands' marine life and history from knowledgeable guides. Dining at locally-owned restaurants offers a chance to savor the islands' culinary scene and engage with the community.
  • Are the San Juan Islands, WA known for any unique natural displays or phenomena during certain seasons?

    The migration of orcas is a major draw, with peak viewing seasons typically in the summer and fall. During the spring and summer, wildflowers bloom across the islands, creating stunning displays of color. The islands also offer exceptional birdwatching opportunities throughout the year, with different species migrating through at various times.
  • What are the best local foods in the San Juan Islands, WA?

    Seafood is a staple, with fresh salmon, crab, and oysters readily available at restaurants and markets. Local farms produce a variety of fruits, vegetables, and meats. Many restaurants feature Pacific Northwest cuisine, incorporating seasonal ingredients into their dishes. Look for restaurants that source their ingredients locally for the freshest and most authentic flavors.
  • What are the best adventurous activities in the San Juan Islands, WA?

    Sea kayaking offers a chance to explore hidden coves and encounter marine wildlife up close. Hiking to the top of Mount Finlayson on Orcas Island provides panoramic views of the islands and surrounding waters. Whale watching tours offer an exciting opportunity to witness these magnificent creatures in their natural habitat. Rock climbing opportunities exist on some of the islands' cliffs, but require experience and proper safety equipment.

Nearby regions

Best San Juan Islands, WA unique stays with a jacuzzi

Among the 174 accommodations in San Juan Islands, WA, here are the 4 best unique accommodations with a jacuzzi

Newly Updated Cottage With Hot Tub, 2 Fireplaces, Fire Pit - San Juan Islands, WA
10 32 reviews

Newly Updated Cottage With Hot Tub, 2 Fireplaces, Fire Pit

cabin, Friday Harbor
This cozy cabin is located on Orcas Island, just a short distance from the Orcas Island Historical Museum and Mt. Constitution, offering a peaceful retreat in the woods above Eastsound. The cabin provides a tranquil escape from the hustle and bustle of everyday life.
The two-bedroom cabin comfortably sleeps six guests and features two living rooms, each with a propane fireplace. Enjoy amenities such as a hot tub, fire pit, dedicated work space, three bathrooms, and a fully equipped kitchen.
Partial View Cabin W/ Hot Tub - 2 Min Walk To West-facing Beach! - San Juan Islands, WA
No reviews

Partial View Cabin W/ Hot Tub - 2 Min Walk To West-facing Beach!

cabin, Friday Harbor
This Friday Harbor seaside cottage is located approximately 3 miles from the Funhouse Discovery Center and Orcas Island Historical Museum, and within 6 miles of Darvill's Bookstore and Crescent Beach.
This one-bedroom, two-bathroom getaway sleeps two guests and boasts a microwave, Jacuzzi, patio, garden, fireplace, free WiFi, and barbecue grills.
Lopez Island Cabin With Hot Tub And Public Beach Access Nearby #Pprov0-18-0047 - San Juan Islands, WA
9.2 115 reviews

Lopez Island Cabin With Hot Tub And Public Beach Access Nearby #Pprov0-18-0047

cabin, Anacortes
This secluded cabin on the south end of Lopez Island offers distant Mud Bay views and beach access, located approximately one mile from local dining and groceries, and a nine-mile bike ride or short drive to the main village.
This 720 square foot cottage accommodates up to four guests with two bedrooms and one bathroom, featuring a fully equipped kitchen, a Jacuzzi, garden, parking, and an outdoor hot tub, with nearby hiking trails and beaches for exploration.
2br Beachfront Cabin On Epic West-facing Beach Beach With Sunsets! - San Juan Islands, WA
No reviews

2br Beachfront Cabin On Epic West-facing Beach Beach With Sunsets!

cabin, Friday Harbor
This beachfront Eastsound cabin offers unparalleled waterfront views and is conveniently located near Eastsound Beaches and Crescent Beach, within a 6-mile radius of The Funhouse Discovery Center and Orcas Island Golf Course.
This two-bedroom, two-bathroom home sleeps six and features a fully equipped kitchen with a microwave, a fireplace, a private patio, a hot tub, and free WiFi.

Best pet friendly San Juan Islands, WA unique stays

Among the 174 accommodations in San Juan Islands, WA, here are the 4 best pet friendly unique accommodations

2br Beachfront Cabin On Epic West-facing Sand And Pebble Beach! - San Juan Islands, WA
10 3 reviews

2br Beachfront Cabin On Epic West-facing Sand And Pebble Beach!

cabin, Friday Harbor
This beachfront Eastsound cottage offers direct beach access and is located within six miles of Eastsound Beaches and Crescent Beach, and under four miles from The Funhouse Discovery Center and Orcas Island Golf Course.
This two-bedroom, two-bathroom vacation rental sleeps six, features a private patio, hot tub, barbecue grills, a fully equipped kitchen with microwave and stovetop, and free WiFi.
A-frame: Treehouse Feels And Vintage Vibes - San Juan Islands, WA
9.9 39 reviews

A-frame: Treehouse Feels And Vintage Vibes

cabin, Bellingham
The Hollar Haus is a tiny A-frame cabin situated on Lummi Peak, a 10-minute drive from the Lummi Island ferry terminal, 1 mile from a salt-water beach, and within 2 miles of four hiking trails.
This pet-friendly cabin accommodates up to 3 guests and features a lofted bedroom, a full kitchen with fridge and freezer, air conditioning, and a garden with a year-round fire pit; a complimentary EV rapid charger will be available soon.
Mount Vernon Camping Resort 16 Ft. Yurt 6 - San Juan Islands, WA
8.9 2 reviews

Mount Vernon Camping Resort 16 Ft. Yurt 6

resort, Alger
Mount Vernon Camping Resort Studio Cabin 4, located in Whitmarsh Junction, Washington, is approximately 11 miles from Mount Vernon's city center and near the Skagit Valley Casino.
This pet-friendly studio cabin offers a fridge, microwave, air conditioning, Wi-Fi, a swimming pool, jacuzzi, and on-site parking; guests can also enjoy the resort's fitness center, restaurant, and barbeque area.
Charming Cabin In Beautiful La Conner With Hot Tub - San Juan Islands, WA
9.8 9 reviews

Charming Cabin In Beautiful La Conner With Hot Tub

cabin, La Conner
This La Conner vacation rental is centrally located, within walking distance of the La Conner Quilt Museum and the Northwest Art Museum.
The one-bedroom, one-bathroom cottage sleeps four and includes a Jacuzzi, Wi-Fi, on-site parking, and a private garden; nearby attractions include Hellams Vineyard and Native Springs.
©2026 cozycozy.com